Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Species
Homo sapiens
ENA first public
2016-09-26
ENA last update
2016-06-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA4028903
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-09-26T11:40:29Z
INSDC last update
2016-06-08T13:19:53Z
INSDC status
public
Submitter Id
76c882e0-2c8a-11e6-ba59-68b599768938
common name
human
sample description
ATAC-seq library preparation from B-lymphoblastoids
sample name
76c882e0-2c8a-11e6-ba59-68b599768938

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
3406466
Reads aligned (%)
81.7
Duplicates removed (%)
30.7
Number of peaks
1311 (qval < 1E-05)

hg19

Number of total reads
3406466
Reads aligned (%)
76.5
Duplicates removed (%)
32.5
Number of peaks
1357 (qval < 1E-05)

Base call quality data from DBCLS SRA