ERX1775043
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Species
Homo sapiens
ENA first public
2016-09-26
ENA last update
2016-06-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA4028861
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-09-26T11:40:29Z
INSDC last update
2016-06-08T13:19:30Z
INSDC status
public
Submitter Id
756fa9a0-2c8a-11e6-ba59-68b599768938
common name
human
sample description
ATAC-seq library preparation from B-lymphoblastoids
sample name
756fa9a0-2c8a-11e6-ba59-68b599768938

Sequenced DNA Library

library_name
16751644
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
4591271
Reads aligned (%)
81.5
Duplicates removed (%)
39.7
Number of peaks
1591 (qval < 1E-05)

hg19

Number of total reads
4591271
Reads aligned (%)
81.2
Duplicates removed (%)
39.7
Number of peaks
1603 (qval < 1E-05)

Base call quality data from DBCLS SRA