Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: NA
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX1749997
Illumina HiSeq 2000 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
No description
Cell type
NA
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-Species
Homo sapiens
ENA first public
2016-09-26
ENA last update
2016-06-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA4028893
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-09-26T11:40:29Z
INSDC last update
2016-06-08T13:19:48Z
INSDC status
public
Submitter Id
767d7020-2c8a-11e6-ba59-68b599768938
common name
human
sample description
ATAC-seq library preparation from B-lymphoblastoids
sample name
767d7020-2c8a-11e6-ba59-68b599768938
Sequenced DNA Library
library_name
16751676
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
3361990
Reads aligned (%)
78.6
Duplicates removed (%)
31.0
Number of peaks
2491 (qval < 1E-05)
hg19
Number of total reads
3361990
Reads aligned (%)
77.3
Duplicates removed (%)
31.5
Number of peaks
2575 (qval < 1E-05)
Base call quality data from
DBCLS SRA