ERX1711553
Illumina MiSeq paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Phenotype
Wild type
ArrayExpress-Species
Mus musculus
ENA first public
2016-09-20
ENA last update
2016-05-31
ENA-CHECKLIST
ERC000011
External Id
SAMEA4018806
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-09-20T09:42:41Z
INSDC last update
2016-05-31T15:29:09Z
INSDC status
public
Submitter Id
de786ae0-271c-11e6-b8c2-68b599768938
common name
house mouse
sample description
T25
sample name
de786ae0-271c-11e6-b8c2-68b599768938

Sequenced DNA Library

library_name
16690390
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
4152607
Reads aligned (%)
22.2
Duplicates removed (%)
11.5
Number of peaks
282 (qval < 1E-05)

mm9

Number of total reads
4152607
Reads aligned (%)
22.1
Duplicates removed (%)
11.5
Number of peaks
273 (qval < 1E-05)

Base call quality data from DBCLS SRA