Antigen

Antigen Class

No description

Antigen

NA

Cell type

Cell type Class

Pluripotent stem cell

Cell type

iPS cells

NA

NA

Sample

age

60-64

banking status

Selected for banking, Shipped to ECACC, Banked at ECACC, Banked at EBiSC

cell type

induced pluripotent stem cell

cnv length different regions mbp

0

cnv length shared differences

0

cnv num different regions

0

culture CO2

5%

culture medium

E8 media

culture passage method

EDTA clump passaging

culture summary

Feeder-free

culture surface coating

vitronectin

date of derivation

2013-11-14

disease state

normal

donor id

SAMEA2398437

donor name

HPSI-uaqe

ebisc name

WTSIi087-A

ethnicity

White - White British

hPSCreg name

WTSIi087-A

material

cell line

method of derivation

CytoTune 1

name

HPSI0813i-uaqe_1

open access

0

phenotype

PATO:0000461;EFO:0004905

predicted population

European

predicted population

European

project

HipSci

reprogramming type

non-integrating virus

reprogramming virus

sendai

sample name

HPSI0813i-uaqe_1

sex

female

sop url

http://www.hipsci.org/hipsci-ips-preparation-standard-operating-procedures

source material

Skin tissue

source material cell type

Fibroblast

source material cell type

Fibroblast

subject id

SAMEA2398437

submission description

HipSci brings together diverse constituents in genomics, proteomics, cell biology and clinical genetics to create a UK national iPS cell resource and use it to carry out cellular genetic studies.

submission identifier

GSB-3

submission title

HipSci - Human Induced Pluripotent Stem Cell Initiative

synonym

2a394936-4dd4-4037-ac7a-5b50b9ad3097

tissue provider

Cambridge BioResource

Sequenced DNA Library

library_name

16203422

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP-Seq Auto

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

26756827

Reads aligned (%)

98.4

Duplicates removed (%)

38.6

Number of peaks

21533 (qval < 1E-05)

hg19

Number of total reads

26756827

Reads aligned (%)

97.8

Duplicates removed (%)

38.9

Number of peaks

21302 (qval < 1E-05)