Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

Material
cell line
Sample Name
HPSI1113i-wetu_2
Sex
female
Submission description
HipSci brings together diverse constituents in genomics, proteomics, cell biology and clinical genetics to create a UK national iPS cell resource and use it to carry out cellular genetic studies.
Submission identifier
GSB-3
Submission title
HipSci - Human Induced Pluripotent Stem Cell Initiative
age
55-59
banking status
Selected for banking, Shipped to ECACC, Banked at ECACC
cell type
induced pluripotent stem cell
cnv length different regions mbp
1
cnv length shared differences
0
cnv num different regions
2
culture CO2
5%
culture medium
KOSR
culture passage method
collagenase and dispase
culture summary
Feeder-dependent
culture surface coating
Mouse embryo fibroblast (MEF) feeder cells
date of derivation
2014-01-23
disease state
normal
donor id
SAMEA2398744
donor name
HPSI-wetu
ethnicity
White - White British
hPSCreg name
WTSIi227-A
method of derivation
CytoTune 1
name
HPSI1113i-wetu_2
open access
1
phenotype
PATO:0000461;EFO:0004905
predicted population
European
project
HipSci
reprogramming type
non-integrating virus
reprogramming virus
sendai
sop url
http://www.hipsci.org/hipsci-ips-preparation-standard-operating-procedures
source material
Skin tissue
source material cell type
Fibroblast
subject id
SAMEA2398744
tissue provider
Cambridge BioResource

Sequenced DNA Library

library_name
16203410
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
25356222
Reads aligned (%)
97.5
Duplicates removed (%)
2.6
Number of peaks
1215 (qval < 1E-05)

hg19

Number of total reads
25356222
Reads aligned (%)
95.7
Duplicates removed (%)
2.9
Number of peaks
549 (qval < 1E-05)

Base call quality data from DBCLS SRA