ERX1628435
Illumina MiSeq paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Phenotype
WT
ArrayExpress-Species
Mus musculus
ENA first public
2016-08-03
ENA last update
2016-05-06
ENA-CHECKLIST
ERC000011
External Id
SAMEA3955555
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-08-03T17:35:59Z
INSDC last update
2016-05-06T15:35:07Z
INSDC status
public
Submitter Id
d5130f90-02d3-11e6-b124-68b59976a384
common name
house mouse
sample description
Serum_50k_ATAC
sample name
d5130f90-02d3-11e6-b124-68b59976a384

Sequenced DNA Library

library_name
16335113
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7122996
Reads aligned (%)
98.5
Duplicates removed (%)
15.3
Number of peaks
1552 (qval < 1E-05)

mm9

Number of total reads
7122996
Reads aligned (%)
98.4
Duplicates removed (%)
15.5
Number of peaks
1575 (qval < 1E-05)

Base call quality data from DBCLS SRA