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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: Unclassified
ATCC
MeSH
RIKEN BRC
ERX1628434
Illumina MiSeq paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Unclassified
Cell type
Unclassified
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-Phenotype
WT
ArrayExpress-Species
Mus musculus
ENA first public
2016-08-03
ENA last update
2016-05-06
ENA-CHECKLIST
ERC000011
External Id
SAMEA3955554
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-08-03T17:35:59Z
INSDC last update
2016-05-06T15:35:06Z
INSDC status
public
Submitter Id
d4fec440-02d3-11e6-b124-68b59976a384
common name
house mouse
sample description
2i_50k_ATAC
sample name
d4fec440-02d3-11e6-b124-68b59976a384
Sequenced DNA Library
library_name
16335112
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only
Sequencing Platform
instrument_model
Illumina MiSeq
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
7957593
Reads aligned (%)
98.8
Duplicates removed (%)
19.9
Number of peaks
4977 (qval < 1E-05)
mm9
Number of total reads
7957593
Reads aligned (%)
98.7
Duplicates removed (%)
20.1
Number of peaks
4958 (qval < 1E-05)
Base call quality data from
DBCLS SRA