Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Digestive tract
Cell type
Colon
NA
NA

Attributes by original data submitter

Sample

ENA-FIRST-PUBLIC
2012-11-08
ENA-LAST-UPDATE
2013-11-04
ENA-SUBMISSION-TOOL
SRA-Webin
External Id
SAMEA1573058
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2012-11-08T17:01:55Z
INSDC last update
2013-11-04T20:06:30Z
INSDC status
public
Submitter Id
ColonNull_IgG
common name
house mouse
sample name
ColonNull_IgG
tissue_type
colon

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
16053258
Reads aligned (%)
84.1
Duplicates removed (%)
12.5
Number of peaks
608 (qval < 1E-05)

mm9

Number of total reads
16053258
Reads aligned (%)
83.9
Duplicates removed (%)
12.7
Number of peaks
700 (qval < 1E-05)

Base call quality data from DBCLS SRA