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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Colon
ATCC
MeSH
RIKEN BRC
ERX161578
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Digestive tract
Cell type
Colon
NA
NA
Attributes by original data submitter
Sample
ENA-FIRST-PUBLIC
2012-11-08
ENA-LAST-UPDATE
2013-11-04
ENA-SUBMISSION-TOOL
SRA-Webin
External Id
SAMEA1573058
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2012-11-08T17:01:55Z
INSDC last update
2013-11-04T20:06:30Z
INSDC status
public
Submitter Id
ColonNull_IgG
common name
house mouse
sample name
ColonNull_IgG
tissue_type
colon
Sequenced DNA Library
library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
16053258
Reads aligned (%)
84.1
Duplicates removed (%)
12.5
Number of peaks
608 (qval < 1E-05)
mm9
Number of total reads
16053258
Reads aligned (%)
83.9
Duplicates removed (%)
12.7
Number of peaks
700 (qval < 1E-05)
Base call quality data from
DBCLS SRA