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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Unclassified
ATCC
MeSH
RIKEN BRC
ERX1611432
Illumina HiSeq 2500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Unclassified
Cell type
Unclassified
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-Phenotype
wildtype
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus domesticus
ENA first public
2016-07-12
ENA last update
2016-04-04
ENA-CHECKLIST
ERC000011
External Id
SAMEA3914968
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-07-12T14:38:52Z
INSDC last update
2016-04-04T10:25:32Z
INSDC status
public
Submitter Id
57e1e040-f032-11e5-8d8a-68b59976a384
common name
western European house mouse
sample description
Hypothalamus DNA bisulfite treated
sample name
57e1e040-f032-11e5-8d8a-68b59976a384
strain
Bl6
sub_species
domesticus
Sequenced DNA Library
library_name
16118125
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Bisulphate qPCR only
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
47235551
Reads aligned (%)
2.6
Duplicates removed (%)
14.2
Number of peaks
171 (qval < 1E-05)
mm9
Number of total reads
47235551
Reads aligned (%)
2.6
Duplicates removed (%)
14.0
Number of peaks
164 (qval < 1E-05)
Base call quality data from
DBCLS SRA