ERX1598867
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Phenotype
wildtype
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus domesticus
ENA first public
2016-07-12
ENA last update
2016-04-04
ENA-CHECKLIST
ERC000011
External Id
SAMEA3914966
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-07-12T14:38:52Z
INSDC last update
2016-04-04T10:23:22Z
INSDC status
public
Submitter Id
57d0f050-f032-11e5-8d8a-68b59976a384
common name
western European house mouse
sample description
Hypothalamus DNA bisulfite treated
sample name
57d0f050-f032-11e5-8d8a-68b59976a384
strain
Bl6
sub_species
domesticus

Sequenced DNA Library

library_name
16118123
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Bisulphate qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
46406830
Reads aligned (%)
3.4
Duplicates removed (%)
17.3
Number of peaks
149 (qval < 1E-05)

mm9

Number of total reads
46406830
Reads aligned (%)
3.4
Duplicates removed (%)
17.2
Number of peaks
141 (qval < 1E-05)

Base call quality data from DBCLS SRA