ERX1585690
Illumina MiSeq paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Xbp1

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
CD4+ T cells
ArrayExpress-DevelopmentalStage
Th2
ArrayExpress-Immunoprecipitate
anti-Xpb1
ArrayExpress-Phenotype
WT
ArrayExpress-Sex
male
ArrayExpress-Species
Mus Musculus
ENA first public
2016-07-05
ENA last update
2016-03-18
ENA-CHECKLIST
ERC000011
External Id
SAMEA3904469
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-07-05T09:22:52Z
INSDC last update
2016-03-18T09:14:11Z
INSDC status
public
Submitter Id
e1de97a0-eb84-11e5-bbcb-68b59976a382
common name
house mouse
sample description
Xbp1_A
sample name
e1de97a0-eb84-11e5-bbcb-68b59976a382
strain
C57BL/6

Sequenced DNA Library

library_name
16050379
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7452466
Reads aligned (%)
91.9
Duplicates removed (%)
31.2
Number of peaks
172 (qval < 1E-05)

mm9

Number of total reads
7452466
Reads aligned (%)
91.8
Duplicates removed (%)
31.7
Number of peaks
181 (qval < 1E-05)

Base call quality data from DBCLS SRA