ERX1514430
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2016-06-07
ENA last update
2016-05-06
ENA-CHECKLIST
ERC000011
External Id
SAMEA3953521
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-06-07T09:37:39Z
INSDC last update
2016-05-06T15:07:14Z
INSDC status
public
Submitter Id
53ea35b0-4a2d-11e5-8614-68b59976a382
common name
house mouse
sample description
Th17_Rep1
sample name
53ea35b0-4a2d-11e5-8614-68b59976a382

Sequenced DNA Library

library_name
14788127
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14471022
Reads aligned (%)
77.2
Duplicates removed (%)
24.9
Number of peaks
14343 (qval < 1E-05)

mm9

Number of total reads
14471022
Reads aligned (%)
77.1
Duplicates removed (%)
25.0
Number of peaks
14305 (qval < 1E-05)

Base call quality data from DBCLS SRA