ERX1514428
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2016-06-07
ENA last update
2016-05-06
ENA-CHECKLIST
ERC000011
External Id
SAMEA3953519
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-06-07T09:37:39Z
INSDC last update
2016-05-06T15:07:12Z
INSDC status
public
Submitter Id
53d96cd0-4a2d-11e5-8614-68b59976a382
common name
house mouse
sample description
Th2_Rep1
sample name
53d96cd0-4a2d-11e5-8614-68b59976a382

Sequenced DNA Library

library_name
14788125
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17853860
Reads aligned (%)
72.7
Duplicates removed (%)
25.5
Number of peaks
7728 (qval < 1E-05)

mm9

Number of total reads
17853860
Reads aligned (%)
72.6
Duplicates removed (%)
25.6
Number of peaks
7739 (qval < 1E-05)

Base call quality data from DBCLS SRA