Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2016-06-07
ENA last update
2016-05-06
ENA-CHECKLIST
ERC000011
External Id
SAMEA3953518
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-06-07T09:37:39Z
INSDC last update
2016-05-06T15:07:12Z
INSDC status
public
Submitter Id
53d12f70-4a2d-11e5-8614-68b59976a382
common name
house mouse
sample description
Th1_Rep2
sample name
53d12f70-4a2d-11e5-8614-68b59976a382

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
16116688
Reads aligned (%)
77.5
Duplicates removed (%)
27.0
Number of peaks
6106 (qval < 1E-05)

mm9

Number of total reads
16116688
Reads aligned (%)
77.5
Duplicates removed (%)
27.1
Number of peaks
6069 (qval < 1E-05)

Base call quality data from DBCLS SRA