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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: Spleen
ATCC
MeSH
RIKEN BRC
ERX1514382
Illumina HiSeq 2500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.
Attributes by original data submitter
Sample
ArrayExpress-Genotype
Wildtype
ArrayExpress-OrganismPart
Spleen
ArrayExpress-Phenotype
Wildtype
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ArrayExpress-TimePoint
4h
ArrayExpress-Treatment
Il4
ENA first public
2016-06-07
ENA last update
2016-05-06
ENA-CHECKLIST
ERC000011
External Id
SAMEA3953026
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-06-07T09:37:39Z
INSDC last update
2016-05-06T15:02:51Z
INSDC status
public
Submitter Id
b1e71410-daaf-11e3-a467-68b59976a382
common name
house mouse
sample description
DNA from cells
sample name
b1e71410-daaf-11e3-a467-68b59976a382
Sequenced DNA Library
library_name
10588094
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Pre-quality controlled
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
13738558
Reads aligned (%)
71.1
Duplicates removed (%)
18.6
Number of peaks
6103 (qval < 1E-05)
mm9
Number of total reads
13738558
Reads aligned (%)
71.0
Duplicates removed (%)
18.8
Number of peaks
6064 (qval < 1E-05)
Base call quality data from
DBCLS SRA