ERX1514370
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

ArrayExpress-Genotype
Wildtype
ArrayExpress-OrganismPart
Spleen
ArrayExpress-Phenotype
Wildtype
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ArrayExpress-TimePoint
4h
ArrayExpress-Treatment
Il4
ENA first public
2016-06-07
ENA last update
2016-05-06
ENA-CHECKLIST
ERC000011
External Id
SAMEA3953026
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-06-07T09:37:39Z
INSDC last update
2016-05-06T15:02:51Z
INSDC status
public
Submitter Id
b1e71410-daaf-11e3-a467-68b59976a382
common name
house mouse
sample description
DNA from cells
sample name
b1e71410-daaf-11e3-a467-68b59976a382

Sequenced DNA Library

library_name
10362706
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
11597281
Reads aligned (%)
70.4
Duplicates removed (%)
19.0
Number of peaks
5436 (qval < 1E-05)

mm9

Number of total reads
11597281
Reads aligned (%)
70.4
Duplicates removed (%)
19.1
Number of peaks
5418 (qval < 1E-05)

Base call quality data from DBCLS SRA