ERX149449
Foxa2 and H2A.Z Mediate Nucleosome Depletion during Embryonic Stem Cell Differentiation

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryo
Cell type
Hepatic progenitors
NA
NA

Attributes by original data submitter

Sample

ENA-FIRST-PUBLIC
2012-12-24T17:01:53Z
ENA-LAST-UPDATE
2018-03-08T15:57:29Z
External Id
SAMEA1695349
INSDC center name
Department of Genetics University of Pennsylvania
INSDC first public
2012-12-24T17:01:53Z
INSDC last update
2018-03-08T15:57:29Z
INSDC status
public
Submitter Id
E-MTAB-1302:Nucleosomes_EHP
broker name
ArrayExpress
cell type
endoderm/hepatic progenitor cell
common name
house mouse
sample name
E-MTAB-1302:Nucleosomes_EHP
scientific_name
Mus musculus

Sequenced DNA Library

library_name
ES_PD_pool_2010-09-22
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Mononucleosomal DNA was collected and pooled from both partial and full digestion of ES or EHP cells with micrococal nuclease.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
189045659
Reads aligned (%)
97.0
Duplicates removed (%)
51.6
Number of peaks
445 (qval < 1E-05)

mm9

Number of total reads
189045659
Reads aligned (%)
96.8
Duplicates removed (%)
51.6
Number of peaks
556 (qval < 1E-05)

Base call quality data from DBCLS SRA