ERX1493890
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Mouse ESCs
ArrayExpress-Immunoprecipitate
No
ArrayExpress-OrganismPart
ESCs
ArrayExpress-Sex
male
ArrayExpress-Species
Mus Musculus
ENA first public
2016-05-24
ENA last update
2016-01-15
ENA-CHECKLIST
ERC000011
External Id
SAMEA3726440
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-05-24T10:12:14Z
INSDC last update
2016-01-15T11:23:52Z
INSDC status
public
Submitter Id
4c34fa40-8e01-11e5-83b1-68b59976a382
common name
house mouse
sample description
input chromatin from tagged line replicate b
sample name
4c34fa40-8e01-11e5-83b1-68b59976a382
strain
C57Bl/6N (JM8)

Sequenced DNA Library

library_name
15633529
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
4749700
Reads aligned (%)
87.9
Duplicates removed (%)
23.4
Number of peaks
1958 (qval < 1E-05)

mm9

Number of total reads
4749700
Reads aligned (%)
87.8
Duplicates removed (%)
23.6
Number of peaks
1951 (qval < 1E-05)

Base call quality data from DBCLS SRA