ERX1493888
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Mouse ESCs
ArrayExpress-Immunoprecipitate
ChIP FLAG M5
ArrayExpress-OrganismPart
ESCs
ArrayExpress-Sex
male
ArrayExpress-Species
Mus Musculus
ENA first public
2016-05-24
ENA last update
2016-01-15
ENA-CHECKLIST
ERC000011
External Id
SAMEA3726438
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-05-24T10:12:14Z
INSDC last update
2016-01-15T11:23:51Z
INSDC status
public
Submitter Id
4c2a9a00-8e01-11e5-83b1-68b59976a382
common name
house mouse
sample description
anti FLAG ChIP on wt line replicate b
sample name
4c2a9a00-8e01-11e5-83b1-68b59976a382
strain
C57Bl/6N (JM8)

Sequenced DNA Library

library_name
15633527
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6618211
Reads aligned (%)
93.3
Duplicates removed (%)
88.4
Number of peaks
2694 (qval < 1E-05)

mm9

Number of total reads
6618211
Reads aligned (%)
93.1
Duplicates removed (%)
88.7
Number of peaks
2704 (qval < 1E-05)

Base call quality data from DBCLS SRA