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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
ERX1493884
Illumina HiSeq 2500 sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
Mouse ESCs
ArrayExpress-Immunoprecipitate
No
ArrayExpress-OrganismPart
ESCs
ArrayExpress-Sex
male
ArrayExpress-Species
Mus Musculus
ENA first public
2016-05-24
ENA last update
2016-01-15
ENA-CHECKLIST
ERC000011
External Id
SAMEA3726442
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-05-24T10:12:14Z
INSDC last update
2016-01-15T11:23:53Z
INSDC status
public
Submitter Id
4c3f5a80-8e01-11e5-83b1-68b59976a382
common name
house mouse
sample description
input chromatin from wt line replicate b
sample name
4c3f5a80-8e01-11e5-83b1-68b59976a382
strain
C57Bl/6N (JM8)
Sequenced DNA Library
library_name
15633531
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
12214922
Reads aligned (%)
98.0
Duplicates removed (%)
12.8
Number of peaks
491 (qval < 1E-05)
mm9
Number of total reads
12214922
Reads aligned (%)
97.7
Duplicates removed (%)
13.0
Number of peaks
497 (qval < 1E-05)
Base call quality data from
DBCLS SRA