ERX1489066
Illumina HiSeq 2000 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Alpha-beta T-cell
NA
NA

Attributes by original data submitter

Sample

ENA first public
2016-05-19
ENA last update
2016-05-18
ENA-CHECKLIST
ERC000011
External Id
SAMEA3993649
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-05-19T17:00:53Z
INSDC last update
2016-05-18T15:11:55Z
INSDC status
public
SAMPLE_ONTOLOGY_URI
http://purl.obolibrary.org/obo/CL_0000624
Submitter Id
S00MYMH1_H3K27me3_BFT
age
6 - 8 weeks
biomaterial provider
Sanger Institute/Cambridge University
biomaterial type
Primary Cell
cell type
CD4-positive, alpha-beta T cell
common name
house mouse
donor sex
female
markers
CD4-positive_CD62L-positive_CD44-low_CD25-negative
molecule
genomic DNA
phenotype
CL:0000624;PATO:0000461
pool id
SC_Pool_6j_ChIP_H3K27me3_T_cell_female_3
sample name
S00MYMH1_H3K27me3_BFT
strain
C57BL/6J
subject id
SC_Pool_6j_ChIP_H3K27me3_T_cell_female_3
tissue type
Spleen

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
36405759
Reads aligned (%)
97.0
Duplicates removed (%)
22.3
Number of peaks
574 (qval < 1E-05)

mm9

Number of total reads
36405759
Reads aligned (%)
96.6
Duplicates removed (%)
22.2
Number of peaks
688 (qval < 1E-05)

Base call quality data from DBCLS SRA