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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: B cells
ATCC
MeSH
RIKEN BRC
ERX1489064
Illumina HiSeq 2000 sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Blood
Cell type
B cells
NA
NA
Attributes by original data submitter
Sample
ENA first public
2016-05-19
ENA last update
2016-05-18
ENA-CHECKLIST
ERC000011
External Id
SAMEA3993647
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-05-19T17:00:53Z
INSDC last update
2016-05-18T15:11:55Z
INSDC status
public
SAMPLE_ONTOLOGY_URI
http://purl.obolibrary.org/obo/CL_0000785
Submitter Id
S00MN7H1_H3K27me3_BFB
age
6 - 8 weeks
biomaterial provider
Sanger Institute/Cambridge University
biomaterial type
Primary Cell
cell type
mature B cell
common name
house mouse
donor sex
female
molecule
genomic DNA
phenotype
CL:0000785;PATO:0000461
pool id
SC_Pool_6j_ChIP_H3K27me3_B_cell_female_3
sample name
S00MN7H1_H3K27me3_BFB
strain
C57BL/6J
subject id
SC_Pool_6j_ChIP_H3K27me3_B_cell_female_3
tissue type
Spleen
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
34940061
Reads aligned (%)
97.5
Duplicates removed (%)
18.7
Number of peaks
497 (qval < 1E-05)
mm9
Number of total reads
34940061
Reads aligned (%)
97.1
Duplicates removed (%)
18.6
Number of peaks
612 (qval < 1E-05)
Base call quality data from
DBCLS SRA