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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: B cells
ATCC
MeSH
RIKEN BRC
ERX1489043
Illumina HiSeq 2500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Blood
Cell type
B cells
NA
NA
Attributes by original data submitter
Sample
ENA first public
2016-05-19
ENA last update
2016-06-20
ENA-CHECKLIST
ERC000011
External Id
SAMEA3855936
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-05-19T15:53:29Z
INSDC last update
2016-06-20T15:22:13Z
INSDC status
public
SAMPLE_ONTOLOGY_URI
http://purl.obolibrary.org/obo/CL_0000785
Submitter Id
dfa0eef0-7643-11e4-8102-68b59976a382
biomaterial provider
Sanger Institute/Cambridge University
biomaterial type
Primary Cell
cell type
mature B cell
common name
house mouse
donor age
6 - 8 weeks
donor sex
male
molecule
genomic DNA
phenotype
CL:0000785;PATO:0000461
pool id
SC_Pool_6j_ChIP_Input_B_cell_male_2
sample name
dfa0eef0-7643-11e4-8102-68b59976a382
strain
C57BL/6J
subject id
SC_Pool_6j_ChIP_Input_B_cell_male_2
tissue type
Spleen
Sequenced DNA Library
library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests
Sequencing Platform
instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
20211661
Reads aligned (%)
98.5
Duplicates removed (%)
9.5
Number of peaks
164 (qval < 1E-05)
mm9
Number of total reads
20211661
Reads aligned (%)
98.4
Duplicates removed (%)
9.8
Number of peaks
128 (qval < 1E-05)
Base call quality data from
DBCLS SRA