ERX1478712
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
mouse ES cells
ArrayExpress-Immunoprecipitate
CHIP
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2016-05-10
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3485799
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-05-10T14:08:13Z
INSDC last update
2018-03-09T01:41:13Z
INSDC status
public
Submitter Id
2001STDY6160219-sc-2356173
common name
house mouse
sample description
ChIP library
sample name
2001STDY6160219-sc-2356173

Sequenced DNA Library

library_name
14501085
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19685324
Reads aligned (%)
98.2
Duplicates removed (%)
6.8
Number of peaks
25542 (qval < 1E-05)

mm9

Number of total reads
19685324
Reads aligned (%)
98.0
Duplicates removed (%)
6.9
Number of peaks
25859 (qval < 1E-05)

Base call quality data from DBCLS SRA