Antigen

Antigen Class

No description

Antigen

NA

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

ENA-FIRST-PUBLIC

2014-11-20T17:01:17Z

ENA-LAST-UPDATE

2018-03-08T15:56:34Z

External Id

SAMEA2024286

INSDC center name

EMBL-EBI

INSDC first public

2014-11-20T17:01:17Z

INSDC last update

2018-03-08T15:56:34Z

INSDC status

public

StrainOrLine

C57BL/6

Submitter Id

E-MTAB-1265:mouse_liver_H3K36me3_1

age

8 week

broker name

ArrayExpress

common name

house mouse

organism part

liver

sample name

E-MTAB-1265:mouse_liver_H3K36me3_1

scientific_name

Mus musculus

sex

male

Sequenced DNA Library

library_name

mouse_liver_H3K36me3_1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP sequencing experiments were performed as described previously (Schmidt, 2009) using the following antibodies H3K4me3 (Milipore, CMA304), H3K36me3 (abcam, ab9050), H3K27me3 (E1F) (Kimura et al), Pol I (sc28714), Pol II (abcam, ab5408), Pol III (1900) and MYBL1 (Sigma, HPA008791).

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

24160392

Reads aligned (%)

99.0

Duplicates removed (%)

9.3

Number of peaks

1035 (qval < 1E-05)

mm9

Number of total reads

24160392

Reads aligned (%)

98.8

Duplicates removed (%)

9.5

Number of peaks

1047 (qval < 1E-05)