ERX1413487
Illumina Genome Analyzer IIx sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA first public
2016-05-31
ENA last update
2018-03-21
ENA-CHECKLIST
ERC000011
External Id
SAMEA3913384
INSDC center alias
SAPIENZA UNIVERSITY OF ROME
INSDC center name
SAPIENZA UNIVERSITY OF ROME
INSDC first public
2016-05-31T17:01:45Z
INSDC last update
2018-03-21T12:41:10Z
INSDC status
public
Submitter Id
SAP_sample_2
common name
human
sample name
SAP_sample_2

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
42800637
Reads aligned (%)
90.6
Duplicates removed (%)
65.9
Number of peaks
917 (qval < 1E-05)

hg19

Number of total reads
42800637
Reads aligned (%)
89.5
Duplicates removed (%)
68.2
Number of peaks
1092 (qval < 1E-05)

Base call quality data from DBCLS SRA