ERX1370811
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

ENA first public
2016-03-03
ENA last update
2016-03-03
ENA-CHECKLIST
ERC000011
External Id
SAMEA3885281
INSDC center alias
University of Dundee
INSDC center name
University of Dundee
INSDC first public
2016-03-03T17:02:10Z
INSDC last update
2016-03-03T11:40:33Z
INSDC status
public
Submitter Id
INPUT_siCTCF
cell line
HeLa
common name
human
sample name
INPUT_siCTCF

Sequenced DNA Library

library_name
INPUT_siCTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
As described in manuscript wiechens et. al.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41493803
Reads aligned (%)
98.0
Duplicates removed (%)
1.1
Number of peaks
653 (qval < 1E-05)

hg19

Number of total reads
41493803
Reads aligned (%)
97.4
Duplicates removed (%)
1.5
Number of peaks
428 (qval < 1E-05)

Base call quality data from DBCLS SRA