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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: HeLa
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX1370807
Illumina HiSeq 2000 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
ENA first public
2016-03-03
ENA last update
2016-03-03
ENA-CHECKLIST
ERC000011
External Id
SAMEA3885277
INSDC center alias
University of Dundee
INSDC center name
University of Dundee
INSDC first public
2016-03-03T17:02:10Z
INSDC last update
2016-03-03T11:40:33Z
INSDC status
public
Submitter Id
siCTCF_RAD21_rep2
cell line
HeLa
common name
human
sample name
siCTCF_RAD21_rep2
Sequenced DNA Library
library_name
siCTCF_RAD21_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
As described in manuscript wiechens et. al.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
51310317
Reads aligned (%)
98.6
Duplicates removed (%)
41.7
Number of peaks
19842 (qval < 1E-05)
hg19
Number of total reads
51310317
Reads aligned (%)
98.1
Duplicates removed (%)
42.2
Number of peaks
19476 (qval < 1E-05)
Base call quality data from
DBCLS SRA