ERX132883
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Species
mus musculus
ENA first public
2012-07-18
ENA last update
2018-03-08
External Id
SAMEA1469155
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2012-07-18T10:54:23Z
INSDC last update
2018-03-08T15:26:31Z
INSDC status
public
Submitter Id
m_Neurons_GFP_repeat_M-sc-2011-04-27T16:47:23Z-1127971
common name
house mouse
sample name
m_Neurons_GFP_repeat_M-sc-2011-04-27T16:47:23Z-1127971

Sequenced DNA Library

library_name
2542763
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
138964202
Reads aligned (%)
78.9
Duplicates removed (%)
31.8
Number of peaks
346 (qval < 1E-05)

mm9

Number of total reads
138964202
Reads aligned (%)
78.7
Duplicates removed (%)
32.2
Number of peaks
329 (qval < 1E-05)

Base call quality data from DBCLS SRA