ERX132773
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA first public
2012-07-18
ENA last update
2018-03-08
External Id
SAMEA1469119
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2012-07-18T10:54:08Z
INSDC last update
2018-03-08T15:25:17Z
INSDC status
public
Submitter Id
m_C169A_H3K4me1_M-sc-2010-11-17-1009299
common name
house mouse
sample name
m_C169A_H3K4me1_M-sc-2010-11-17-1009299

Sequenced DNA Library

library_name
1502758
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
30048590
Reads aligned (%)
93.5
Duplicates removed (%)
10.1
Number of peaks
446 (qval < 1E-05)

mm9

Number of total reads
30048590
Reads aligned (%)
93.2
Duplicates removed (%)
10.1
Number of peaks
469 (qval < 1E-05)

Base call quality data from DBCLS SRA