ERX132712
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Immunoprecipitate
to be provided
ArrayExpress-OrganismPart
to be provided
ArrayExpress-Species
Mus Musculus
ENA first public
2012-07-18
ENA last update
2018-03-08
External Id
SAMEA1466576
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2012-07-18T10:53:58Z
INSDC last update
2018-03-08T15:47:20Z
INSDC status
public
Submitter Id
m_E14Tg2a_EB_d8_diff1-sc-2012-06-20T13:54:29Z-1259167
common name
house mouse
sample description
cDNA from total RNA prepared using ScriptSeq kit (Epicentre)
sample name
m_E14Tg2a_EB_d8_diff1-sc-2012-06-20T13:54:29Z-1259167

Sequenced DNA Library

library_name
3554572
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
161878747
Reads aligned (%)
73.9
Duplicates removed (%)
59.9
Number of peaks
20964 (qval < 1E-05)

mm9

Number of total reads
161878747
Reads aligned (%)
73.8
Duplicates removed (%)
59.9
Number of peaks
20897 (qval < 1E-05)

Base call quality data from DBCLS SRA