ERX132647
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
B cells (CD19+ sorted)
ArrayExpress-Immunoprecipitate
Anti H3K4me3 Millipore 07-473
ArrayExpress-Species
Mus musculus
ENA first public
2012-07-18
ENA last update
2018-03-08
External Id
SAMEA1464049
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2012-07-18T10:53:21Z
INSDC last update
2018-03-08T15:32:40Z
INSDC status
public
Submitter Id
m_Bcell_H3K4me3_P-sc-2011-11-15T14:50:53Z-43053
common name
house mouse
sample description
DNA isolated from ChIP
sample name
m_Bcell_H3K4me3_P-sc-2011-11-15T14:50:53Z-43053

Sequenced DNA Library

library_name
151062
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17537847
Reads aligned (%)
92.6
Duplicates removed (%)
31.5
Number of peaks
13454 (qval < 1E-05)

mm9

Number of total reads
17537847
Reads aligned (%)
92.0
Duplicates removed (%)
31.6
Number of peaks
13329 (qval < 1E-05)

Base call quality data from DBCLS SRA