Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Blood

Cell type

Th1 Cells

MeSH Description

A subset of helper-inducer T-lymphocytes which synthesize and secrete INTERLEUKIN-2; INTERFERON-GAMMA; and INTERLEUKIN-12. Due to their ability to kill antigen-presenting cells and their lymphokine-mediated effector activity, Th1 cells are associated with vigorous delayed-type hypersensitivity reactions.

Sample

ArrayExpress-CellType

Th1 cells

ArrayExpress-Immunoprecipitate

Anti H3K4me3 Millipore 07-473

ArrayExpress-Species

Mus musculus

ENA first public

2012-07-18

ENA last update

2018-03-08

External Id

SAMEA1464040

INSDC center alias

SC

INSDC center name

Wellcome Sanger Institute

INSDC first public

2012-07-18T10:53:21Z

INSDC last update

2018-03-08T15:32:40Z

INSDC status

public

Submitter Id

m_Th1_H3K4me3_P-sc-2011-11-15T14:50:51Z-43051

common name

house mouse

sample description

DNA isolated from ChIP

sample name

m_Th1_H3K4me3_P-sc-2011-11-15T14:50:51Z-43051

Sequenced DNA Library

library_name

151060

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Standard

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

15358178

Reads aligned (%)

88.7

Duplicates removed (%)

27.5

Number of peaks

14692 (qval < 1E-05)

mm9

Number of total reads

15358178

Reads aligned (%)

88.1

Duplicates removed (%)

27.6

Number of peaks

14634 (qval < 1E-05)