ERX1288408
Illumina MiSeq paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
CD4+ T cell
ArrayExpress-DevelopmentalStage
Th2
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2016-01-19
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3565990
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-01-19T09:19:06Z
INSDC last update
2018-03-09T06:42:32Z
INSDC status
public
Submitter Id
Input_tn5-sc-2416536
common name
house mouse
sample description
Input_tn5
sample name
Input_tn5-sc-2416536
strain
C57BL/6 JAX

Sequenced DNA Library

library_name
15005827
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
3514887
Reads aligned (%)
99.4
Duplicates removed (%)
2.1
Number of peaks
115 (qval < 1E-05)

mm9

Number of total reads
3514887
Reads aligned (%)
99.4
Duplicates removed (%)
2.3
Number of peaks
116 (qval < 1E-05)

Base call quality data from DBCLS SRA