ERX1276051
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
F36P
ArrayExpress-Immunoprecipitate
K27me3
ArrayExpress-Species
Homo Sapiens
ENA first public
2016-01-12
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3504435
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-01-12T09:05:11Z
INSDC last update
2018-03-09T04:33:31Z
INSDC status
public
Submitter Id
F36P_BR1_K27me3-sc-2380160
common name
human
sample description
F36P_K27me3_ChIP_DNA
sample name
F36P_BR1_K27me3-sc-2380160

Sequenced DNA Library

library_name
14727857
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19592602
Reads aligned (%)
98.7
Duplicates removed (%)
1.1
Number of peaks
329 (qval < 1E-05)

hg19

Number of total reads
19592602
Reads aligned (%)
98.0
Duplicates removed (%)
1.2
Number of peaks
206 (qval < 1E-05)

Base call quality data from DBCLS SRA