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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: UT-7
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX1276049
Illumina HiSeq 2000 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Blood
Cell type
UT-7
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous
Attributes by original data submitter
Sample
ArrayExpress-CellType
UT7-Epo
ArrayExpress-GrowthCondition
Iscove's Modified Dulbecco's Medium_10% HI FBS_0.4 U/ml epogen
ArrayExpress-Immunoprecipitate
H3K27ac
ArrayExpress-Phenotype
Normal
ArrayExpress-Species
Homo Sapien
ENA first public
2016-01-12
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3488324
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-01-12T09:05:11Z
INSDC last update
2018-03-09T02:15:57Z
INSDC status
public
Submitter Id
UT7_BR1_H3K27ac-sc-2356865
common name
human
sample description
UT7 H3K27me3 ChIP DNA
sample name
UT7_BR1_H3K27ac-sc-2356865
Sequenced DNA Library
library_name
14727833
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
15660179
Reads aligned (%)
98.6
Duplicates removed (%)
11.3
Number of peaks
12077 (qval < 1E-05)
hg19
Number of total reads
15660179
Reads aligned (%)
97.9
Duplicates removed (%)
11.4
Number of peaks
11985 (qval < 1E-05)
Base call quality data from
DBCLS SRA