ERX1276046
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
UT-7
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

ArrayExpress-CellType
UT7-Epo
ArrayExpress-GrowthCondition
Iscove's Modified Dulbecco's Medium_10% HI FBS_0.4 U/ml epogen
ArrayExpress-Immunoprecipitate
CTCF
ArrayExpress-Phenotype
Normal
ArrayExpress-Species
Homo Sapien
ENA first public
2016-01-12
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3488321
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-01-12T09:05:11Z
INSDC last update
2018-03-09T02:22:33Z
INSDC status
public
Submitter Id
UT7_BR2_CTCF-sc-2356862
common name
human
sample description
UT7 CTCF ChIP DNA
sample name
UT7_BR2_CTCF-sc-2356862

Sequenced DNA Library

library_name
14727892
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14623991
Reads aligned (%)
98.6
Duplicates removed (%)
3.5
Number of peaks
28187 (qval < 1E-05)

hg19

Number of total reads
14623991
Reads aligned (%)
97.8
Duplicates removed (%)
3.6
Number of peaks
27747 (qval < 1E-05)

Base call quality data from DBCLS SRA