Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27me3
wikigenes
PDBj
CellType: KU812
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX1276040
Illumina HiSeq 2000 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27me3
Cell type
Cell type Class
Blood
Cell type
KU812
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous
Attributes by original data submitter
Sample
ArrayExpress-CellType
Ku812
ArrayExpress-Immunoprecipitate
K27me3
ArrayExpress-Species
Homo Sapiens
ENA first public
2016-01-12
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3504449
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-01-12T09:05:11Z
INSDC last update
2018-03-09T02:59:23Z
INSDC status
public
Submitter Id
KU812_BR2_K27me3-sc-2380167
common name
human
sample description
KU812_K27m3_ChIP_DNA
sample name
KU812_BR2_K27me3-sc-2380167
Sequenced DNA Library
library_name
14727846
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
7734907
Reads aligned (%)
98.4
Duplicates removed (%)
1.2
Number of peaks
234 (qval < 1E-05)
hg19
Number of total reads
7734907
Reads aligned (%)
97.6
Duplicates removed (%)
1.3
Number of peaks
178 (qval < 1E-05)
Base call quality data from
DBCLS SRA