ERX1276039
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
KU812
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

ArrayExpress-CellType
Ku812
ArrayExpress-Immunoprecipitate
K27me3
ArrayExpress-Species
Homo Sapiens
ENA first public
2016-01-12
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3504447
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-01-12T09:05:11Z
INSDC last update
2018-03-09T04:02:27Z
INSDC status
public
Submitter Id
KU812_BR1_K27me3-sc-2380166
common name
human
sample description
KU812_K27m3_ChIP_DNA
sample name
KU812_BR1_K27me3-sc-2380166

Sequenced DNA Library

library_name
14727834
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12386716
Reads aligned (%)
98.5
Duplicates removed (%)
1.4
Number of peaks
375 (qval < 1E-05)

hg19

Number of total reads
12386716
Reads aligned (%)
97.7
Duplicates removed (%)
1.7
Number of peaks
246 (qval < 1E-05)

Base call quality data from DBCLS SRA