ERX1236445
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

ENA first public
2015-12-17
ENA last update
2015-12-04
ENA-CHECKLIST
ERC000011
External Id
SAMEA3696890
INSDC center alias
Max Planck Institute of Immunobiology and Epigenetics
INSDC center name
Max Planck Institute of Immunobiology and Epigenetics
INSDC first public
2015-12-17T17:01:19Z
INSDC last update
2015-12-04T11:16:48Z
INSDC status
public
Submitter Id
HepG2
bio material
ATCC HB-8065
cell line
HepG2
cell type
hepatocellular carcinoma
common name
human
sample name
HepG2
sex
male
tissue type
liver

Sequenced DNA Library

library_name
HepG2_ENCODE_H3K4me3_10k
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext Ultra DNA Library Prep kit for Illumina (E7370S, NEB)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14363250
Reads aligned (%)
87.9
Duplicates removed (%)
14.5
Number of peaks
16931 (qval < 1E-05)

hg19

Number of total reads
14363250
Reads aligned (%)
87.3
Duplicates removed (%)
14.6
Number of peaks
16916 (qval < 1E-05)

Base call quality data from DBCLS SRA