ERX1236390
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Gonad
Cell type
Sperm
NA
NA

Attributes by original data submitter

Sample

ENA first public
2016-01-02
ENA last update
2015-12-03
ENA-CHECKLIST
ERC000011
External Id
SAMEA3696847
INSDC center alias
GReD - UMR6293 CNRS - U1103 Inserm
INSDC center name
GReD - UMR6293 CNRS - U1103 Inserm
INSDC first public
2016-01-02T17:01:19Z
INSDC last update
2015-12-03T22:00:58Z
INSDC status
public
Submitter Id
C57BL/6_Transgenic gpx5;sngpx4-/
cell type
sperm
common name
house mouse
dev stage
adult
sample name
C57BL/6_Transgenic gpx5;sngpx4-/
strain
C56BL/6

Sequenced DNA Library

library_name
C57BL/6_(gpx5;sngpx4-/-)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEB_DNA Ultra kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31713275
Reads aligned (%)
89.3
Duplicates removed (%)
38.3
Number of peaks
1342 (qval < 1E-05)

mm9

Number of total reads
31713275
Reads aligned (%)
88.9
Duplicates removed (%)
39.2
Number of peaks
1336 (qval < 1E-05)

Base call quality data from DBCLS SRA