ERX1234994
Illumina HiSeq 2500 sequencing; Application of recombinant PHD domain instead of anti-H3K4me3 antibody

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TAF3

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

ENA first public
2016-05-31
ENA last update
2015-12-03
ENA-CHECKLIST
ERC000011
External Id
SAMEA3694550
INSDC center alias
University of Stuttgart
INSDC center name
University of Stuttgart
INSDC first public
2016-05-31T17:01:43Z
INSDC last update
2015-12-03T10:54:53Z
INSDC status
public
Submitter Id
E-MTAB-4103:Taf3 PHD replicate 2
broker name
ArrayExpress
cell line
HepG2
common name
human
immunoprecipitate
recombinant Taf3 PHD domain
individual
2
sample name
E-MTAB-4103:Taf3 PHD replicate 2

Sequenced DNA Library

library_name
Taf3 PHD replicate 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
No treatment TrueSeq

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14990767
Reads aligned (%)
98.5
Duplicates removed (%)
15.2
Number of peaks
4164 (qval < 1E-05)

hg19

Number of total reads
14990767
Reads aligned (%)
97.6
Duplicates removed (%)
16.2
Number of peaks
4211 (qval < 1E-05)

Base call quality data from DBCLS SRA