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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
ERX1188375
Illumina HiSeq 2500 sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
Embryonic stem cells
ArrayExpress-Immunoprecipitate
ChIP
ArrayExpress-OrganismPart
ESCs
ArrayExpress-Sex
male
ArrayExpress-Species
Mus Musculus
ENA first public
2015-11-03
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3464682
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-11-03T14:36:37Z
INSDC last update
2018-03-09T02:21:40Z
INSDC status
public
Submitter Id
Mysm1_ChIP6123561-sc-2314354
common name
house mouse
sample description
ChIP DNA sample
sample name
Mysm1_ChIP6123561-sc-2314354
strain
JM8
Sequenced DNA Library
library_name
14464823
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
43673130
Reads aligned (%)
96.3
Duplicates removed (%)
16.3
Number of peaks
672 (qval < 1E-05)
mm9
Number of total reads
43673130
Reads aligned (%)
96.0
Duplicates removed (%)
16.2
Number of peaks
740 (qval < 1E-05)
Base call quality data from
DBCLS SRA