ERX1149117
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

ArrayExpress-CellType
K562
ArrayExpress-GrowthCondition
RPMI1640_10% HiFBS_1% L-glut
ArrayExpress-Immunoprecipitate
CTCF
ArrayExpress-Phenotype
Normal
ArrayExpress-Species
Homo Sapien
ENA first public
2015-10-13
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3430801
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-10-13T14:08:55Z
INSDC last update
2018-03-09T01:26:43Z
INSDC status
public
Submitter Id
K562_BR2_TR1_CTCF-sc-2304914
common name
human
sample description
K562 ChIP DNA
sample name
K562_BR2_TR1_CTCF-sc-2304914

Sequenced DNA Library

library_name
14050736
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10257727
Reads aligned (%)
98.7
Duplicates removed (%)
1.2
Number of peaks
4153 (qval < 1E-05)

hg19

Number of total reads
10257727
Reads aligned (%)
97.9
Duplicates removed (%)
1.3
Number of peaks
3977 (qval < 1E-05)

Base call quality data from DBCLS SRA