Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CTCF
wikigenes
PDBj
CellType: KU812
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX1149084
Illumina HiSeq 2000 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CTCF
Cell type
Cell type Class
Blood
Cell type
KU812
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous
Attributes by original data submitter
Sample
ArrayExpress-CellType
KU812
ArrayExpress-GrowthCondition
RPMI1640_10% FBS
ArrayExpress-Immunoprecipitate
CTCF
ArrayExpress-Phenotype
Normal
ArrayExpress-Species
Homo Sapien
ENA first public
2015-10-13
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3430798
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-10-13T14:08:56Z
INSDC last update
2018-03-09T01:05:42Z
INSDC status
public
Submitter Id
KU812_BR1_TR1_Inp-sc-2304911
common name
human
sample description
KU812 ChIP DNA
sample name
KU812_BR1_TR1_Inp-sc-2304911
Sequenced DNA Library
library_name
14050795
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
8657531
Reads aligned (%)
98.4
Duplicates removed (%)
0.4
Number of peaks
261 (qval < 1E-05)
hg19
Number of total reads
8657531
Reads aligned (%)
97.5
Duplicates removed (%)
0.5
Number of peaks
225 (qval < 1E-05)
Base call quality data from
DBCLS SRA