ERX1149068
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
F36P
ArrayExpress-GrowthCondition
RPMI1640_10% FBS_1% Glutamax_1% sodium pyruvate_10ng/ml rhGM-CSF
ArrayExpress-Immunoprecipitate
CTCF
ArrayExpress-Phenotype
Normal
ArrayExpress-Species
Homo Sapien
ENA first public
2015-10-13
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3430797
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-10-13T14:08:56Z
INSDC last update
2018-03-09T00:52:00Z
INSDC status
public
Submitter Id
F36P_BR1_TR2_CTCF-sc-2304910
common name
human
sample description
F36P ChIP DNA
sample name
F36P_BR1_TR2_CTCF-sc-2304910

Sequenced DNA Library

library_name
14050783
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17456959
Reads aligned (%)
98.3
Duplicates removed (%)
28.9
Number of peaks
33803 (qval < 1E-05)

hg19

Number of total reads
17456959
Reads aligned (%)
97.5
Duplicates removed (%)
29.1
Number of peaks
33500 (qval < 1E-05)

Base call quality data from DBCLS SRA