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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CTCF
wikigenes
PDBj
CellType: MEG-01
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX1149050
Illumina HiSeq 2000 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CTCF
Cell type
Cell type Class
Blood
Cell type
MEG-01
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia
Attributes by original data submitter
Sample
ArrayExpress-CellType
Meg01
ArrayExpress-GrowthCondition
RPMI1640_10% FBS_1% Glutamax_1% sodium pyruvate
ArrayExpress-Immunoprecipitate
CTCF
ArrayExpress-Phenotype
Normal
ArrayExpress-Species
Homo Sapien
ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2015-10-13T14:08:56Z
ENA-LAST-UPDATE
2018-03-09T01:10:48Z
External Id
SAMEA3430794
INSDC center name
SC
INSDC first public
2015-10-13T14:08:56Z
INSDC last update
2018-03-09T01:10:48Z
INSDC status
public
Submitter Id
Meg01_BR1_TR1_CTCF-sc-2304907
common name
human
sample description
Meg01 ChIP DNA
sample name
Meg01_BR1_TR1_CTCF-sc-2304907
scientific_name
Homo sapiens
Sequenced DNA Library
library_name
14050747
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
17906580
Reads aligned (%)
98.9
Duplicates removed (%)
12.6
Number of peaks
47927 (qval < 1E-05)
hg19
Number of total reads
17906580
Reads aligned (%)
98.4
Duplicates removed (%)
12.8
Number of peaks
47455 (qval < 1E-05)
Base call quality data from
DBCLS SRA