ERX1144252
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
ES cells
ArrayExpress-DevelopmentalStage
Embryo
ArrayExpress-Genotype
Sall4KO
ArrayExpress-OrganismPart
Embryo
ArrayExpress-Sex
male
ArrayExpress-Species
mouse
ENA first public
2015-10-13
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3444221
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-10-13T13:58:20Z
INSDC last update
2018-03-09T01:39:33Z
INSDC status
public
Submitter Id
TQ_RNAseq_9-sc-2308406
common name
house mouse
sample description
RNAseq libraries from rRNA depleted whole RNA Sall4KO replicate3
sample name
TQ_RNAseq_9-sc-2308406
strain
129/Ola

Sequenced DNA Library

library_name
14130507
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
20834031
Reads aligned (%)
85.9
Duplicates removed (%)
26.0
Number of peaks
19994 (qval < 1E-05)

mm9

Number of total reads
20834031
Reads aligned (%)
85.8
Duplicates removed (%)
26.0
Number of peaks
19967 (qval < 1E-05)

Base call quality data from DBCLS SRA