ERX1126236
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
HEL 92.1.7
Primary Tissue
Blood
Tissue Diagnosis
Erythroleukemia

Attributes by original data submitter

Sample

ArrayExpress-CellType
HEL9217
ArrayExpress-GrowthCondition
RPMI1640_10% HiFBS_1% L-glut
ArrayExpress-Phenotype
Normal
ArrayExpress-Species
Homo Sapien
ENA first public
2015-09-22
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3368294
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-09-22T09:32:37Z
INSDC last update
2018-03-09T00:40:24Z
INSDC status
public
Submitter Id
HEL9217_BR1_TR1_Input-sc-2284526
common name
human
sample description
HEL9217 ChIP DNA
sample name
HEL9217_BR1_TR1_Input-sc-2284526

Sequenced DNA Library

library_name
13954966
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8930030
Reads aligned (%)
98.6
Duplicates removed (%)
2.2
Number of peaks
239 (qval < 1E-05)

hg19

Number of total reads
8930030
Reads aligned (%)
97.5
Duplicates removed (%)
2.3
Number of peaks
178 (qval < 1E-05)

Base call quality data from DBCLS SRA